For a more complete and up-to-date publication list, please visit this page.

2017

  • Development of an automated assessment tool for MedWatch reports in the FDA adverse event reporting system. Journal of the American Medical Informatics Association Han, L., Ball, R., Pamer, C. A., Altman, R. B., Proestel, S. 2017
  • Opportunities for developing therapies for rare genetic diseases: focus on gain-of-function and allostery. Orphanet journal of rare diseases. Chen, Binbin, and Russ B. Altman. 2017; 12.1 (61)

2016

  • A research roadmap for next-generation sequencing informatics. SCIENCE TRANSLATIONAL MEDICINE. Altman, R. B., Prabhu, S., Sidow, A., Zook, J. M., Goldfeder, R., Litwack, D., Ashley, E., Asimenos, G., Bustamante, C. D., Donigan, K., Giacomini, K. M., Johansen, E., Khuri, N., Lee, E., Liang, X. S., Salit, M., Serang, O., Tezak, Z., Wall, D. P., Mansfield, E., Kass-Hout, T. 2016; 8 (335)
  • Human induced pluripotent stem cell-derived cardiomyocytes recapitulate the predilection of breast cancer patients to doxorubicin-induced cardiotoxicity. NATURE MEDICINE. Burridge, P. W., Li, Y. F., Matsa, E., Wu, H., Ong, S., Sharma, A., Holmstrom, A., Chang, A. C., Coronado, M. J., Ebert, A. D., Knowles, J. W., Telli, M. L., Witteles, R. M., Blau, H. M., Bernstein, D., Altman, R. B., Wu, J. C. 2016; 22 (5): 547-556.
  • Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants. PLOS COMPUTATIONAL BIOLOGY. Bagley, S. C., Sirota, M., Chen, R., Butte, A. J., Altman, R. B. 2016; 12 (4)
  • PharmGKB summary: very important pharmacogene information for RYR1. PHARMACOGENETICS AND GENOMICS. Alvarellos, M. L., Krauss, R. M., Wilke, R. A., Altman, R. B., Klein, T. E. 2016; 26 (3): 138-144
  • Large-scale extraction of gene interactions from full-text literature using DeepDive. BIOINFORMATICS. Mallory, E. K., Zhang, C., Re, C., Altman, R. B. 2016; 32 (1): 106-113

2015

  • Human Germline CRISPR-Cas Modification: Toward a Regulatory Framework. AMERICAN JOURNAL OF BIOETHICS. Evitt, N. H., Mascharak, S., Altman, R. B. 2015; 15 (12): 25-29
  • Unmet needs: Research helps regulators do their jobs. SCIENCE TRANSLATIONAL MEDICINE. Altman, R. B., Khuri, N., Salit, M., Giacomini, K. M.
  • Sequence to Medical Phenotypes: A Framework for Interpretation of Human Whole Genome DNA Sequence Data. PLoS genetics. Dewey, F. E., Grove, M. E., Priest, J. R., Waggott, D., Batra, P., Miller, C. L., Wheeler, M., Zia, A., Pan, C., Karzcewski, K. J., Miyake, C., Whirl-Carrillo, M., Klein, T. E., Datta, S., Altman, R. B., Snyder, M., Quertermous, T., Ashley, E. A. 2015; 11 (10)
  • Sequence to Medical Phenotypes: A Framework for Interpretation of Human Whole Genome DNA Sequence Data. PLOS GENETICS Dewey, F. E., Grove, M. E., Priest, J. R., Waggott, D., Batra, P., Miller, C. L., Wheeler, M., Zia, A., Pan, C., Karzcewski, K. J., Miyake, C., Whirl-Carrillo, M., Klein, T. E., Datta, S., Altman, R. B., Snyder, M., Quertermous, T., Ashley, E. A. 2015; 11 (10)
  • PharmGKB summary: peginterferon-alpha pathway. PHARMACOGENETICS AND GENOMICS. Shuldiner, S. R., Gong, L., Muir, A. J., Altman, R. B., Klein, T. E. 2015; 25 (9): 465-474
  • High Resolution Prediction of Calcium-Binding Sites in 3D Protein Structures Using FEATURE. Journal of chemical information and modeling. Zhou, W., Tang, G. W., Altman, R. B. 2015; 55 (8): 1663-1672
  • Learning the Structure of Biomedical Relationships from Unstructured Text. PLoS computational biology. Percha, B., Altman, R. B. 2015; 11 (7)
  • Relating Essential Proteins to Drug Side-Effects Using Canonical Component Analysis: A Structure-Based Approach. JOURNAL OF CHEMICAL INFORMATION AND MODELING. Liu, T., Altman, R. B. 2015; 55 (7): 1483-1494

Before 2015

  • PharmGKB summary: gemcitabine pathway. PHARMACOGENETICS AND GENOMICS. Alvarellos, M. L., Lamba, J., Sangkuhl, K., Thorn, C. F., Wang, L., Klein, D. J., Altman, R. B., Klein, T. E. 2014; 24 (11): 564-574
  • Genetic variant in folate homeostasis is associated with lower warfarin dose in African Americans. BLOOD. Daneshjou, R., Gamazon, E. R., Burkley, B., Cavallari, L. H., Johnson, J. A., Klein, T. E., Limdi, N., Hillenmeyer, S., Percha, B., Karczewski, K. J., Langaee, T., Patel, S. R., Bustamante, C. D., Altman, R. B., Perera, M. A. 2014; 124 (14): 2298-2305
  • PharmGKB summary: uric acid-lowering drugs pathway, pharmacodynamics. PHARMACOGENETICS AND GENOMICS. McDonagh, E. M., Thorn, C. F., Callaghan, J. T., Altman, R. B., Klein, T. E. 2014; 24 (9): 464-476
  • PharmGKB summary: very important pharmacogene information for N-acetyltransferase 2. PHARMACOGENETICS AND GENOMICS. McDonagh, E. M., Boukouvala, S., Aklillu, E., Hein, D. W., Altman, R. B., Klein, T. E. 2014; 24 (8): 409-425
  • Interpreting the CYP2D6 results from the International Tamoxifen Pharmacogenetics Consortium. Clinical pharmacology & therapeutics. Province, M. A., Altman, R. B., Klein, T. E. 2014; 96 (2): 144-146
  • Integrating Systems Biology Sources Illuminates Drug Action. CLINICAL PHARMACOLOGY & THERAPEUTICS. Gottlieb, A., Altman, R. B. 2014; 95 (6): 663-669
  • Reconstruction of the Mouse Otocyst and Early Neuroblast Lineage at Single-Cell Resolution. CELL. Durruthy-Durruthy, R., Gottlieb, A., Hartman, B. H., Waldhaus, J., Laske, R. D., Altman, R., Heller, S. 2014; 157 (4): 964-978
  • Translational Bioinformatics: Linking the Molecular World to the Clinical World. CLINICAL PHARMACOLOGY & THERAPEUTICS. Altman, R. B. 2012; 91 (6): 994-1000
  • Data-Driven Prediction of Drug Effects and Interactions. SCIENCE TRANSLATIONAL MEDICINE. Tatonetti, N. P., Ye, P. P., Daneshjou, R., Altman, R. B. 2012; 4 (125)
  • Clinical assessment incorporating a personal genome. LANCET. Ashley, E. A., Butte, A. J., Wheeler, M. T., Chen, R., Klein, T. E., Dewey, F. E., Dudley, J. T., Ormond, K. E., Pavlovic, A., Morgan, A. A., Pushkarev, D., Neff, N. F., Hudgins, L., Gong, L., Hodges, L. M., Berlin, D. S., Thorn, C. F., Sangkuhl, K., Hebert, J. M., Woon, M., Sagreiya, H., Whaley, R., Knowles, J. W., Chou, M. F., Thakuria, J. V., Rosenbaum, A. M., Zaranek, A. W., Church, G. M., Greely, H. T., Quake, S. R., Altman, R. B. 2010; 375 (9725): 1525-1535

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